Index

A

add_scale_bars() (in module aind_ephys_utils.plots.annotations) aind_ephys_utils module aind_ephys_utils.accessors module aind_ephys_utils.accessors.dataarray module aind_ephys_utils.adapters module aind_ephys_utils.adapters.dataframe module aind_ephys_utils.align module aind_ephys_utils.config module aind_ephys_utils.metrics module aind_ephys_utils.metrics.ccg module aind_ephys_utils.metrics.connectivity module aind_ephys_utils.metrics.latency module aind_ephys_utils.ops module aind_ephys_utils.ops.align module aind_ephys_utils.ops.baseline module aind_ephys_utils.ops.bin module aind_ephys_utils.ops.normalize module aind_ephys_utils.ops.pseudopop module aind_ephys_utils.ops.psth module

aind_ephys_utils.ops.reduce module aind_ephys_utils.ops.restrict module aind_ephys_utils.ops.smooth module aind_ephys_utils.plots module aind_ephys_utils.plots.annotations module aind_ephys_utils.plots.colors module aind_ephys_utils.plots.psth module aind_ephys_utils.plots.raster module aind_ephys_utils.plots.trajectory module aind_ephys_utils.standards module aind_ephys_utils.standards.conventions module aind_ephys_utils.standards.validate module align() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.align) align_to_events() (in module aind_ephys_utils.align) all_spikes (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1] annotate_events() (in module aind_ephys_utils.plots) (in module aind_ephys_utils.plots.annotations) attr_history (aind_ephys_utils.standards.conventions.Conventions attribute) attr_kind (aind_ephys_utils.standards.conventions.Conventions attribute) attr_time_unit (aind_ephys_utils.standards.conventions.Conventions attribute) attr_timebase (aind_ephys_utils.standards.conventions.Conventions attribute) attr_valid_intervals (aind_ephys_utils.standards.conventions.Conventions attribute)

B

baseline() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.baseline) bin() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.bin)

build_shape_prefilter() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.connectivity)

C

cc_leads_over_std() (in module aind_ephys_utils.metrics.ccg) ccg() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) ccg_allpairs_sparse() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) ccg_between_sets_sparse() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) ccg_trial_paired() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg)

ccg_trial_surrogates() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) channel (aind_ephys_utils.standards.conventions.Conventions attribute) clip_spikes_to_trials() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) clip_to_window() (in module aind_ephys_utils.metrics.ccg) configure_defaults() (in module aind_ephys_utils) (in module aind_ephys_utils.config) Conventions (class in aind_ephys_utils.standards.conventions) counts (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1]

D

default_time_unit (aind_ephys_utils.standards.conventions.Conventions attribute)

derangements() (in module aind_ephys_utils.metrics.ccg) durations (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1]

E

EphysAlignError EphysDataArrayAccessor (class in aind_ephys_utils.accessors.dataarray) EphysValidationError

event (aind_ephys_utils.standards.conventions.Conventions attribute) event_time_var (aind_ephys_utils.standards.conventions.Conventions attribute) events_to_dataset() (in module aind_ephys_utils.align)

F

from_dataframe() (in module aind_ephys_utils.adapters) (in module aind_ephys_utils.adapters.dataframe)

FromDataFrameError

G

get_color_for_region() (in module aind_ephys_utils.plots) (in module aind_ephys_utils.plots.colors)

guide (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor property)

I

infer_kind() (in module aind_ephys_utils.standards.validate) is_binned_spikes() (in module aind_ephys_utils.standards.validate)

is_continuous() (in module aind_ephys_utils.standards.validate) is_events() (in module aind_ephys_utils.standards.validate) is_ragged_spikes() (in module aind_ephys_utils.standards.validate)

J

jitter_spikes_times() (in module aind_ephys_utils.metrics.ccg)

K

kind (aind_ephys_utils.standards.validate.ValidationResult attribute), [1]

M

measure_fwhm() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) measure_per_pair() (in module aind_ephys_utils.metrics.ccg) measure_prominence() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) message (aind_ephys_utils.standards.validate.ValidationResult attribute), [1] module aind_ephys_utils aind_ephys_utils.accessors aind_ephys_utils.accessors.dataarray aind_ephys_utils.adapters aind_ephys_utils.adapters.dataframe aind_ephys_utils.align aind_ephys_utils.config aind_ephys_utils.metrics aind_ephys_utils.metrics.ccg aind_ephys_utils.metrics.connectivity aind_ephys_utils.metrics.latency aind_ephys_utils.ops aind_ephys_utils.ops.align aind_ephys_utils.ops.baseline aind_ephys_utils.ops.bin aind_ephys_utils.ops.normalize aind_ephys_utils.ops.pseudopop aind_ephys_utils.ops.psth aind_ephys_utils.ops.reduce aind_ephys_utils.ops.restrict aind_ephys_utils.ops.smooth aind_ephys_utils.plots aind_ephys_utils.plots.annotations aind_ephys_utils.plots.colors aind_ephys_utils.plots.psth aind_ephys_utils.plots.raster aind_ephys_utils.plots.trajectory aind_ephys_utils.standards aind_ephys_utils.standards.conventions aind_ephys_utils.standards.validate

monte_carlo_pvalue() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg)

N

NN_to_pair_vec() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg)

normalize() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.normalize)

O

offsets (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1]

ok (aind_ephys_utils.standards.validate.ValidationResult attribute), [1]

P

pair_vec_to_NN() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) peak_contributing_spikes() (in module aind_ephys_utils.metrics.ccg) plot (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor property) post (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1] pre (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1]

pseudopop() (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.pseudopop) psth() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.psth) (in module aind_ephys_utils.plots) (in module aind_ephys_utils.plots.psth)

R

raster() (in module aind_ephys_utils.plots) (in module aind_ephys_utils.plots.raster) reduce() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.reduce) rescale_ccgs() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg)

rescale_ccgs_zero_mean() (in module aind_ephys_utils.metrics.ccg) restrict() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.restrict) run_surrogates() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.connectivity) run_two_stage_mc() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.connectivity)

S

segments (aind_ephys_utils.metrics.ccg.TrialSegments attribute), [1] smooth() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils.ops) (in module aind_ephys_utils.ops.smooth)

smooth_ccgs() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.ccg) spike_latency() (in module aind_ephys_utils.metrics) (in module aind_ephys_utils.metrics.latency) spike_times_col (aind_ephys_utils.standards.conventions.Conventions attribute)

T

time (aind_ephys_utils.standards.conventions.Conventions attribute) to_events() (in module aind_ephys_utils.align) trajectory() (in module aind_ephys_utils.plots) (in module aind_ephys_utils.plots.trajectory)

trial (aind_ephys_utils.standards.conventions.Conventions attribute) trial_end_col (aind_ephys_utils.standards.conventions.Conventions attribute) trial_start_col (aind_ephys_utils.standards.conventions.Conventions attribute) TrialSegments (class in aind_ephys_utils.metrics.ccg)

U

unit (aind_ephys_utils.standards.conventions.Conventions attribute)

V

validate() (aind_ephys_utils.accessors.dataarray.EphysDataArrayAccessor method) (in module aind_ephys_utils) (in module aind_ephys_utils.standards.validate)

ValidationResult (class in aind_ephys_utils.standards.validate)